Fall 2025
Information for the course, including homework assignments and information about exams, will be posted here as we progress through the semester.
Lecture 01 – Introduction to MSCBIO 2025 and setup [reading] [slides] [notebook]
Lecture 02 – File systems and bash [reading] [slides] [notebook]
Lecture 03 – More on the command line [reading] [slides] [notebook]
Lecture 04 – Introduction to Python [reading] [slides] [notebook]
Lecture 05 – Data visualization [reading] [slides] [notebook]
Lecture 06 – Vectors with numpy [reading] [slides] [notebook]
Lecture 07 – Differential equation modeling [reading (introduction)] [slides] [notebook]
Lecture 08 – Principles of code design and functions [reading 1] [reading 2] [slides] [notebook]
Lecture 09 – Function fitting [reading] [slides] [notebook]
Lecture 10 – Systems biology modeling [reading]
Follow the assignment links below to work on and submit each homework through GitHub Classroom.
Homework 01 – Bash introduction [assignment]
Homework 02 – Plotting in Python [assignment]
Homework 03 – Differential equations [assignment]
Homework 04 – Function fitting [assignment]
The materials here draw from previous versions of the course taught by David Koes and friends.